NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211653_10114295

Scaffold Ga0211653_10114295


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10114295 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1198
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005743Metagenome / Metatranscriptome391Y
F026152Metagenome199Y
F028035Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0211653_101142951F028035N/AIEEDTEKHSNYELIQYEFPFPENSVLIERDKEMNRILNKPIIITNE
Ga0211653_101142954F005743GGAGMRNLIVYKVDYVNTKEEYNIHTGKFVRTKRIVMTPDEVDQTDGYWRNHRNVEKKFAKQMMGREDAYYDSKYRVTRVRKAKXKK
Ga0211653_101142955F026152AGGAMKKIKTPKFWTAKAWAEHLLHISSFTDAKEVKSVPSNTRKQVSRKSNKSKQSSKVTV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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