Scaffold Ga0211653_10080194

Overview

Basic Information

• Taxon OID: 3300020421
• Scaffold ID: Ga0211653_10080194
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1458
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018477	Metagenome	235	Y
F044798	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211653_100801942	F018477	AGG	MANKINKQGASSLLAPYYQYHPKCYCRLCLKLRKKISYKQQATSQEATSNKWLLGVLDNLIIRLYKIVKQKG
Ga0211653_100801943	F044798	GGCGG	MTDKEKLKEILKICKINAKGWDPIQHDGPAEFKAICDLIENKGYYKNNGK