Scaffold Ga0211653_10051868

Overview

Basic Information

• Taxon OID: 3300020421
• Scaffold ID: Ga0211653_10051868
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1859
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F090327	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211653_100518681	F090327	N/A	NQKGWDLNLFAVNQPSAIFDEWMKTIDPYEDESPYPLRISQITRAWEKIDNVGKHNYLSRQTNPRYKEIMKGN
Ga0211653_100518685	F003834	AGGA	MSSTKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKISKMHEEIRVLYNDHKKFANEMDSILLEKKGKLDNAINTLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYSGPRGKALQMLDMSKEYCKNLLNAGQSLSTVWGVLNTEMSKEKINTNTIPKPEFLAITK
Ga0211653_100518686	F003677	AGG	MPNRKVIMVDRNVNYFEADVGKKVYEIEHETTYVTKWQVVAEDRGQAFDIWLEQSKEDLKTEDGINCVCSYVKDYSQIGNTKEIAEIKYDKEMDEVIAE