Scaffold Ga0211653_10018459

Overview

Basic Information

• Taxon OID: 3300020421
• Scaffold ID: Ga0211653_10018459
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3321
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211653_100184595	F004988	N/A	MVKLVETICPRCNGNGYIVVQNEDIDCPMCEEEFMHLGGTVTTHNGYVMLPVEQTRRNVEGGRESIVKWSGETLPEKGQ
Ga0211653_100184596	F083388	AGGAG	MVGMLMQKRISNIEWVITRCNPEFKKVWERKLEQLLDRRVEKAYERMVENARRVH
Ga0211653_100184597	F030928	AGAAGG	MKEWLKTLEGYISFCILGFTIFICVIVIIVNCRYIIKLENTIETMWHEIVQVKETNISLYQFIEEHKNDFD
Ga0211653_100184598	F000720	GAGG	MTLIKENKTVRKEIPNRMMSATFALPIDGRRVVGILDYTANKTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEEIIMGKQPEKKQRELSTDPYAMKE