NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211653_10016157

Scaffold Ga0211653_10016157


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10016157 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3576
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085543Metagenome / Metatranscriptome111N
F103047Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0211653_100161575F085543N/AMRYIKGIKIVSSLLFCIVISAQDIKINDIKNSIQTGPLVGNRNVGFGLKNILEEVVQDQDYNLNDRSENVLDVELIYFDVKRTQSNIALYSKSSSQTEIIAIAKYKKKKIKVKGTAKDITTSLILLNEQGKFTQNSVSVALKKLSENIIKKLKL
Ga0211653_100161576F103047N/AMRKLLFLLLPLFCLAQDLKLDHSYTNAEDFAVGDTITIKFNTIQVTNNVDPNLYIFDYEYNNKLLQKITHRFKVTDNSANTNAQTSLTHWDGYKYKVLSTYDEDNLSAQYLHGWFNRTQVQGDTNSYPTDNDWSVERITIQDGVGITYNNTLIEVDFKIKDKINTNYSNYSNVTHLNWMRAEDNSTSTKYDVDAMQQKITLSDVEGGDAGSVTINLKTENDKPTHYKYDILSNNNSVASGNFDANSQAIVTGLENDVKYDINITVDNNLASDWLDDVVTVTDVFLVFKEAIGAGSSPSGSASTFTHALQSLLGEVNNSGNVDFDDSYVMLSHIMDENVSEYFTSSTNGAKDIWGEKTQYGYATDDYYFGQKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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