NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211653_10002596

Scaffold Ga0211653_10002596


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10002596 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9730
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033639Metagenome / Metatranscriptome177N
F033826Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0211653_1000259611F033826AGGAGMALCSYSDVETFLQIDVDSALQTNLTNTFIPYVDASIKRFLGYDVEQATFTEVFDGEEKKDIFLRHIPVQSITTVTEDSATLTEGNENDFVIYTNGQLRRVSIRWSGVKPQNVSVTYVGGYASSDIPEQIKFTSARAAARLFMTSLQTSAKADTGTISSHLSDSSTQTGFDISLTERIGDYDVSYADVVIQALQPVLTTADMAVLQPFRSRFFV
Ga0211653_100025963F033639AGGAGMSFNTSGTISEVLIGTGVLYYADRTTSSLVFPADNSGAWENPTSLSVPFSEVGYSEDGWTLEVDKTFEDVMVAEEVDPIKTLKSAQEVRLTGELSQAGIDKLQIAMGGGVKAEDTITAVTTQTTGSDFDTGYDSYIPPLSDTFTEYAMVLHTDGPAGADRQFHIPRAVNVGSFAMSHQKAPAKVSLATEFKLLVPDSTLNVGSTGGAYYLFRVIDNTNDTDELDIN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.