NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211653_10002291

Scaffold Ga0211653_10002291


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10002291 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10440
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009243Metagenome / Metatranscriptome321Y
F019396Metagenome230Y
F048972Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0211653_1000229110F048972AGGMQIKNLGVCNTIDWDSVIEQCASVDPEYVGPSHKRGDTIPGLDPILDMWEQAGYKTVHEGGTAGWDMFIPGKQFDQSIADQWNQFYGLDCKNVWISRVWPGRFAPIHWDVHDDEENLSDCPRYHCHIGTPQWGHIFIAGDETFYNIPQGTTYEWVDRKLWHAGTNCGLVPKYIWNAW
Ga0211653_1000229115F009243N/ATSLISKDKKTFCQWYYNDEQYHGGHNQVVDPDLMEEKWLREINFIQEMEMHYPQHVPEIQDIDFVNRKLFLKIDGPDMWELAGCQGKDYSVVDSWQDQMLDIIQAHRNLGIYKYSMHPSSYFVVDGTLKSINYFFCYKDTDLPISLRSVMSHISEDRQADLLPKMTAAGIDVNTPTDHVQIQRLAFDSFKTNFPDDVMEKAKDIYA
Ga0211653_100022917F019396GGAMKWNHYLKLDSIGRPCMAQQTYEPLVSEDGKTFCKNYGFPNEYAYRDIQHRPLYTKEVVDWFFQNELTYLELFKDKKYAPEVKDIDYKNQKIYIKWYGKSCNQVIYDPEVEEWPEYMWRRQIRDIIVDQFDEGIYKLTMYPHCHYITDYKQMKCIDWYGCVPIDDPYIEEKYMQGIIHDTAQFRLDETGELVEDKINLEIMFKRSLSTHVLWGDQNMSYIYEELFNA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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