Scaffold Ga0211653

Basic Information
Taxon OID	3300020421 Open in IMG/M
Scaffold ID	Ga0211653_10001647 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020421 Open in IMG/M

Scaffold ID

Ga0211653_10001647 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12415
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12415

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (87.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.2476	Long. (^o)	-85.3343	Alt. (m)	Depth (m)	40
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_102

Coordinates

Lat. (^o)

-5.2476

Long. (^o)

-85.3343

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F077304	Metagenome / Metatranscriptome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0211653_1000164711	F077304	GAG	LDNFDFTKALLETKRPNIGEIELTLFENCHLNCAFCHHDKKSTVGLSREGMFSKIPLVETHVKKMVGMVKTCQINMVGGELFQDRISHWAYNDYYDLLIDIKKIYDEHNMKIKVVWVTSFQFSKQERVQKLLDDLNTAGIPSYIICSYDFDGRPVKGPYGRNIEYFADYITSINMVATVPSIKRFMADDDEYFHYLYNKFDNFYFDDYIPDKGFDHLIPSDSQYLDFLKFVYHNYPDINPMADLIENESNHMHCMALNKVTIFPDNSISNCRWNRYTKTDFNTPLNRGDNASMMQAYMDEHGCLSCKWWNKCGFRCYTQWDWKNRERDLPDCVMRMWFNYQQQHQETHMQLEHDVAYS
Ga0211653_1000164715	F042906	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDANQLQRAEDFIKTITNQGILVDEILIGPTDFLASENFYEVMPQLESVINDNSPILAFVSTLIDGDIIRFCNWITSRINTDTEIEIGIATNPHKFFEKKYVQHIKDVLKYIDENLEHEVTYTFVVNIKDYGLDYSALHDQAVKQFNTILDFIPSVSRSHKSNIILATLDKFNEYFNVLSKDTKLNNIMVDHSHGGMNYQVLNYKKGEWFISPFMYENMAIYDDMFKIKSFNDIMPIIESQQYLAKGTECETCELYFSCYNRKIILLRDYLGKDRCIAPKENMMRNIDNYNHAAQTMYQWDGYSVDNDKKGYRKKFLVTKDNDPELERIKSISYVK
Ga0211653_1000164716	F042905	N/A	LLAGGQYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISAIGFTSTLLQPYWLIKEKLDKIWSLYRHIKRIPDIDFKIVLDVDKYLNGELDDWYKKLKLFEHGSVQFRVNYYKGVFDRISYNELCEKTYEDFNAPVVITPSFLTDRNARGKVKQHLANFRKDLLEQKIDSKWRDYYTFFDAKFNGLGCQNYSFYGGKLYVNPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEFMMSCAERNVHMYMESRDLTSCVAIKEYMHATH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211653_10001647

Overview

Ecosystem & Geography

Associated Families

Sequences