Scaffold Ga0211580_10103301

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211580_10103301

Scaffold Ga0211580_10103301

Overview

Basic Information
Taxon OID	3300020420 Open in IMG/M
Scaffold ID	Ga0211580_10103301 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1195
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.493	Long. (^o)	-159.0606	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002137	Metagenome / Metatranscriptome	590	Y
F059072	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_101033013	F002137	AGGAG	MKVSELIEALSYYDGNDDITFYYLKDNILTNCQLEDISFYTSSMGIEFTVQDTSEIMEEV
Ga0211580_101033015	F059072	GAG	MNKLDQTIEDLKFCVKTLGMNDEQVEEFMDITGQFGVRPEYFTNEFIFLTGRGLEEDGKLHDPDYLNIAVFNAMFF

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.