Scaffold Ga0211580_10088838

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10088838
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1299
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100888382	F000720	GAGG	MTLIKENTKVRKQIPNRMPSATFTLPIDGRRVVGIVNYDVTDTGIIPMAFWVKLKPTDSYLDRELRASGKLISRCLQNNESLKDLVDTLSQDNVIGQMANYLHKNMEDIIMGKQPDKKQRELSTDPYAMKE
Ga0211580_100888383	F030928	AGGAG	MKKKLLTELKVYTNFLLAGLTIFVCLIVIVVNSRYIVKLESTIDTMWHEIEQVKETNIGLYQFIEEHGDDFN
Ga0211580_100888385	F004988	N/A	MGELVKTICPRCDGNGYITVQDKIGEDMMPFDCPMCEEEVMCMGKKVKTHNGHVMLPIEQTRLNVEGGRESITKWSKETLPEKGKQ