Scaffold Ga0211580_10066986

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10066986
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1518
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009691	Metagenome / Metatranscriptome	314	Y
F011578	Metagenome	289	N
F023367	Metagenome / Metatranscriptome	210	N
F041244	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100669861	F041244	N/A	AVEDWENFDELSAHELSHLFGFVFKMCVLKRDYVKIGYYSNLFGGTNND
Ga0211580_100669862	F023367	GGAGG	MTKRKFIFEESFVSYANVEIYAENEEDARLQFQNGNYQYYDVSDYTDGHKLISVTEEEPVNYYQGA
Ga0211580_100669863	F009691	AGGAG	MKSELNSKDYVTFARKFVKETVDMMDIEELKSIVSDHIHEMIQEGEDTYGQEGAFEEMKSWDEGTFLSVAEDFELELEGV
Ga0211580_100669864	F011578	GGAGG	MITGFITGVAVAVPTALITMKLLNSSLFISNTELREANAKISLIINNLDDFREERLKDKMERLGITDKLDERLSTHIK