Scaffold Ga0211580_10066364

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211580_10066364

Scaffold Ga0211580_10066364

Overview

Basic Information
Taxon OID	3300020420 Open in IMG/M
Scaffold ID	Ga0211580_10066364 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1525
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.493	Long. (^o)	-159.0606	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097124	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100663645	F097124	AGGAG	MITDRLKVILEELSLAEEDAQKCEDGNASAGRRVRKASMNAIKELKELRALILQQIKGDS

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