Scaffold Ga0211580_10045885

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10045885
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1868
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F002565	Metagenome / Metatranscriptome	547	Y
F030780	Metagenome	184	Y
F066840	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100458852	F000999	AGGA	MTNEIPEEIKQKIDDLHNKSEFVVSWFAKKYKKTIFRLGTLNKEGCRTWEKGGKKYMCFWDVVIERYTTCIDPMITYKKVRN
Ga0211580_100458853	F002565	GAGG	MLKAFYFALHFLVIFLGCIIAIHFNMTLGLIIAGTFIVKWWFMFPQMEGRNDRQS
Ga0211580_100458854	F030780	GGA	MTDKVKQVIWVFNSEKNKKQRIQLQTLLDRVNGTYKQRHLNKSVKYFALEKDRDEFAKDCRS
Ga0211580_100458857	F066840	AGG	MANIKLFYDYTKRKDGFMGRENRRYWLLNTKTGIKIRITEKQYDILSS