Scaffold Ga0211580_10031147

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10031147
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2314
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012584	Metagenome	279	Y
F018189	Metagenome	236	Y
F073646	Metagenome	120	Y
F092069	Metagenome	107	Y
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100311471	F092069	N/A	FEYNGKSKEIPIDEIKSVNDVADAYEKLGLKSKIPVKRRLYYFLPNGKYHSFLSNKNHKYAVCCTEKDTKTGGDYTDDYAKAKDKAENLNRKMNNPEYGYRKWVVVDIKGGK
Ga0211580_100311474	F018189	GAGG	MELSKEQMEKVILELETSYNSKIFDDENLIIIINLFKDYLNKGE
Ga0211580_100311475	F073646	AGGAG	MLQSEYLDLAIELYDIYSTHDIHHRRWLTARELQRIKGGPGLIAKVKNKKGKMSELQPVFVDYVNTQRQYRSCNTPQQWTCKFDDWLQDKYEFTKEELDELRSDRGRQSRRETSQEVTI
Ga0211580_100311476	F099447	GGAGG	MPKKDADKIINHCFSDLIKWTYDDAVFQLTEIFSFTDYECEQLLKEYDILSDTTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISTAKKLISATALTSDDYDDQRDFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLKR
Ga0211580_100311477	F012584	N/A	MKLKPYLPENTFYLNEDSLPKEHHTDRFGKVMVFRKDVGWTVIPLADAVQYLAMKHTHWTFTPDTPYD