Scaffold Ga0211580_10023203

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10023203
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2711
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002215	Metagenome / Metatranscriptome	582	Y
F007475	Metagenome	350	Y
F035329	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100232031	F035329	GAG	MATRKALVLVSGLFQELNSSADKLDFAGNNTSDLSEGTNEYFTQARARGSVSVASGNGLTYNSSTG
Ga0211580_100232034	F002215	N/A	MEPQVIAAIISGSIGAFAGISRALGNFNKKLDRRFENIERKVEKLKNEVLHDYVLKEDFLREMQAVHSKLDRILDHLLNK
Ga0211580_100232036	F007475	N/A	NHNLNKNDKIQLNFTSGNAISGEYTITDVPNPNSFTVVYPFTQTTGGYVTVENLKKHEYVGAWLLEPSDKPIGKGLESWEKRWAKEKRKMQEAVEVFALYNRSTKWEGNKNIIGDFNLPQDVANFDPSVIAMTLTDSLKRDETGGLNRSGKPFNTTNRMIAMINKLFNKAPTVLDDIKFGIVNKPLSEFTNVFEAGLLKAGDYINGELLDTADNTSNMDAGTYNPETAQDTVVDAGLYIN