NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10018426

Scaffold Ga0211580_10018426


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10018426 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3068
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86B(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054090Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0211580_100184263F054090N/AMNKNKLIATIVLVLLGFSTSFILFLYQTERLDMQTAQTLALYSFGALILFGAVYLYFDLKNLNKK

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