Scaffold Ga0211580_10014587

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10014587
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3476
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023614	Metagenome / Metatranscriptome	209	Y
F060823	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100145874	F023614	AGGAG	MVARNPNNLIGFSHFNGLATDIEMFTIDGGATLANETNPGEAMEAIMETVGTKTTILGVGAEDGNGAFRIMVHGGAWTAAALQADIRALGATVGANNYDATGATVGDFAF
Ga0211580_100145876	F060823	AGGA	MKAREFTINVPINIKINGDGDPEIDMPNTNDPQPGQEELDPNPVMVPPLQQNIELKKAALGKEGDVVDKITQDRDQSDPLEDVDDGKNKLVGVVFAGDDSHLED