Scaffold Ga0211580_10002745

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211580_10002745

Scaffold Ga0211580_10002745

Overview

Basic Information
Taxon OID	3300020420 Open in IMG/M
Scaffold ID	Ga0211580_10002745 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8879
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.493	Long. (^o)	-159.0606	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033465	Metagenome / Metatranscriptome	177	Y
F048307	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100027456	F033465	AGGA	MTDFILLTTLALCIVAMIGENSNPRGMNIFWYKVNVKRKAYWKALTEYDSGNNKGNGPR
Ga0211580_100027458	F048307	N/A	MPSLGSDEKPVLMTNKKNKGRIGKGSRTRPSAVSTQQFSDNWDKIFNKKTNEKKEINSK

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