Scaffold Ga0211580_10000658

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10000658
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20038
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (72.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F042374	Metagenome	158	Y
F059879	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_1000065819	F059879	N/A	MTLLFVLVILEGTQIYNESIEYGSIDKCNWYAEKINFYNERQTRNTFSAYCKPKVVTRKE
Ga0211580_100006583	F005751	AGGA	MDIYSLQFDPHKISHQQEELGIIFADLDTAVELMKKEEKMIIAELTLQFSRQKMYKNMKELDGLIYNHDKFRDFTNRFSETLKKRNRAKIRFESFKAFRDDLRTKVVNERELAKHNL
Ga0211580_100006587	F042374	GGAG	MKKSKLIFTLLSAVVIGGCSTMPIVDSRGKSSANIKGNMNRFHDDYYTCKSLVEDNTSYVFDKSKVVYNSIRWRVLWLSPKANTRKHFINRCLEGRGYNVINK