Scaffold Ga0211580_10000236

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10000236
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37005
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (70.15%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F005431	Metagenome / Metatranscriptome	401	Y
F016292	Metagenome	248	Y
F017045	Metagenome / Metatranscriptome	243	Y
F030882	Metagenome	184	N
F032821	Metagenome	179	N
F046989	Metagenome	150	N
F081230	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_1000023629	F017045	AGGA	MAKSNSLLRRYDRLDKLHSEIMQKPKTNNRQCVNSLKAFKKYVKIYRQIVCVENEDSKFINAQT
Ga0211580_1000023635	F030882	AGGAG	MDFKDLIDHYETLDKKDLIEKLVFKNATILNQDKVIEKLEDENKRLTEMESNHQKINGQLTEQIKQLKGEK
Ga0211580_1000023636	F016292	N/A	MTNHPKILGDCYKKFNLAHTSKSQNTYPDDIRFRNYILLTPQQKANLPSNCSFEGGKIAHEIVQKIKCENLDYEQAAKALQKKIDDYQALDEKDKIKFDFIIKNLKPLVSNHLANIDELAKQKWQSELEFTHWADGITTYFLAYVDIVGQTDFGDIKNVFGTLTKTKKGFSYSKKKCPKVPFHSDCLQIALYSKLLPTHKPFLTYASESDRIIFTPENCVELRKESLQFYYEELVLYQKCWEKKLELADGDKKVLAMLCKPDLSEIRKDGFWWKGIDQEIVKMFRSFYGL
Ga0211580_1000023640	F046989	GAGG	MKTFLFLVLLTQQGLHYEKIHIKNYTSCDDAYKSKAIWYDNPKFKDGNGQLWGFHIYKNKPIVASFCKDQDGNWLL
Ga0211580_1000023641	F032821	AGGA	MIEIKLDLYDLMAASQTGLLRVYESLRLKQEWGHNYKGTVNDQIAKSISGACAELAVCRYLDTAFNFHVNHGSNPDIIWHDTRLQVRSQLPKKHNSLIIRPKGSKQNEIYVLVIDKTPIFELQGFINSTHVLGTEHFLTNFGIADRPMVHSLGIEKLTPIKFLKDGAWN
Ga0211580_1000023644	F001839	N/A	MKYFEKFDKDLINNKNLNSHEKLIYVICKSFEFAPNGCRISHKYLMKRTGIKTVATLTKCLDRLQLFGLLARKQINNGTNHYVFEKNLMQDYIQHNLNKRRKIKLSKNKQQKNYAIHDRKVIHIVTNKK
Ga0211580_1000023646	F081230	GGA	MITIRLTTEELDRFLGIAAFVDSKLPAPKKPLCSTNFQMIDVSPDKNSYKDSVATPAKPRIIPTSKQLTIYDFVLLLLIDVGAEDRELIYLRNFPHRSFRQLKRFYIGDSHEKIRYLYHRALVQACEIANKNLKKYLQ
Ga0211580_1000023650	F005431	AGG	MFDYDDGQKGYSAVIYIMESTNSVVVHFGGFNDLTECKYFSHHIMDDLGIENLLNVPQGVTIH