Scaffold Ga0211580_10000175

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10000175
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43851
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (46.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004748	Metagenome / Metatranscriptome	425	Y
F005279	Metagenome	406	Y
F005612	Metagenome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_1000017540	F004748	GAG	MRLYERQSKLGVYHTFHRKNTIFVFKCDCCGVTFLRPRAQVDPERASNDYKHVCSFCDSKQFAQKVGVKMRKIYQLDASSTKSL
Ga0211580_1000017551	F005279	AGGA	MNSKDKMLAWIDRLGLIVVHTEIKPYGPGTRRYMVGRNIEEPKKSHQLPSGKWQSTHGVQEWLTPEPLDGIQIKAWLTDYEKNL
Ga0211580_100001757	F005612	N/A	MANGKKKIKRPKDTKLWKVLSGTYGKQTPEQKAVERLICAIQQELEWDDKDLATFTKIQHGTIDWSGNARSKRRTRKHLRKRS