Scaffold Ga0211580_10000156

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10000156
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46274
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021559	Metagenome / Metatranscriptome	218	Y
F030784	Metagenome / Metatranscriptome	184	Y
F049704	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_1000015638	F049704	N/A	MTDKYYYYEAVMGTGKKIHLFARDDIEAAYRATHIAKWHWHTTLTDIYLDKYHHYNEERISEQLQHDS
Ga0211580_1000015644	F030784	GGAGG	MPFNTYIEDKAMIPVLLGYDWMVSHGTWTDCPYETYVFLKKKVVHNGNAKPLA
Ga0211580_1000015645	F021559	GGAG	MTDHAPIDQPILEILNAYNPLEVKDILINGARRKATKHKDWDNVLAYYQEWDGYMHHYLLDSPDAWNHYAIMQKAYTMTDHTAADQKEYIKDVFYLYLDVLASDIGHKWDLHNRPRKQIEDEVLAIELKIRKESLGVIDGGKS