NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10000096

Scaffold Ga0211580_10000096


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10000096 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57363
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (71.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002282Metagenome575Y
F036268Metagenome170Y
F084112Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0211580_100000962F036268AGGAMKLTNCNDCEGKGYYTDVISSGLSDPNDPYHEPHIERCDTCKVFNDDVEAKEYHEKN
Ga0211580_1000009637F084112GGAGMITNGNSGDIFNTNVTTENKIVKSGRTRAMGVVLNTTAASGDFHLRDGGASGTVKFKYKTSGVTSGGSPIVINFPGPILFETDLCVAFTTEHVTVCSVFYN
Ga0211580_1000009689F002282N/AMMSDTDIKNHHKLVKDLENKKPKGPAEDRGPLDLTKRIEVLEFRNEKLHKYNEKLTEEVRTLRRKLDDKG

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