Scaffold Ga0211580_10000096

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10000096
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57363
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (71.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002282	Metagenome	575	Y
F036268	Metagenome	170	Y
F084112	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100000962	F036268	AGGA	MKLTNCNDCEGKGYYTDVISSGLSDPNDPYHEPHIERCDTCKVFNDDVEAKEYHEKN
Ga0211580_1000009637	F084112	GGAG	MITNGNSGDIFNTNVTTENKIVKSGRTRAMGVVLNTTAASGDFHLRDGGASGTVKFKYKTSGVTSGGSPIVINFPGPILFETDLCVAFTTEHVTVCSVFYN
Ga0211580_1000009689	F002282	N/A	MMSDTDIKNHHKLVKDLENKKPKGPAEDRGPLDLTKRIEVLEFRNEKLHKYNEKLTEEVRTLRRKLDDKG