Scaffold Ga0211580_10000091

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10000091
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58788
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (82.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014510	Metagenome	262	Y
F042935	Metagenome	157	Y
F054944	Metagenome / Metatranscriptome	139	Y
F057443	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_1000009134	F042935	GGAG	MYNYDTIIKQLEAMSLAHQDEFAQKLIEKNSPLAVTLSTKINIAHQDKFYTNSPEMIESLEGRGHYGSSI
Ga0211580_1000009147	F014510	AGGA	MVEMEMINQFVNQLAMCELLSAHSLIQPSMAFECDQIQTFIKESYFDNDYNAWIKWWDAVVVPTIAELQAMVENRIQ
Ga0211580_100000915	F057443	N/A	MKFFLVVTFLMANTAALDRPMYIFKNPSFESMKECREYVSVMNMKIYQQAVQSYNYRYTPEAIYCLTKDAVKEIFEYNYEQENTKKEST
Ga0211580_1000009164	F054944	AGG	MEIRPLAAKVTANGSSNKTTVGKAQNVYICATADDLITNVTTGGTFQMHENQSIVIQKNKEDELHAGTVTTHFTKIAYPRG