Scaffold Ga0211580_10000090

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211580_10000090

Scaffold Ga0211580_10000090

Overview

Basic Information
Taxon OID	3300020420 Open in IMG/M
Scaffold ID	Ga0211580_10000090 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	58796
Total Scaffold Genes	109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	73 (66.97%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.493	Long. (^o)	-159.0606	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049928	Metagenome	146	N
F066129	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_1000009010	F066129	AGGA	MAKRMKSGYTVNEIQDIIQTAIDTANDDKGYGVEGALDDLYSLVEDLDEHQNIEIPLINEGANATQ
Ga0211580_1000009017	F049928	AGG	MKNFVTNREYSGKNVDILMASGKGEEFAGFHQGKKFFGVKGTDLKGMKAAAVVQFVVKTKKADGDESKSIRYKSVFAKSDFESAIARNKVINPNRTVKSSNELLSEVA

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