Scaffold Ga0211580_10000063

Overview

Basic Information

• Taxon OID: 3300020420
• Scaffold ID: Ga0211580_10000063
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70981
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (64.42%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.493
  • Long. (^o): -159.0606
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071749	Metagenome / Metatranscriptome	122	Y
F078577	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_1000006337	F071749	N/A	MIVFTPLDIPPIPNKQSILDNFIGGEKFAWWKEETLLGVKDLSVPFGEMKPWNDFAKQKYPELLHWIDTYFPFEYKFYVRIARSTGNVAPHVDGNYVKAPHPHHMTITQEMFDHQRENEPIGYRFVVSGSRDSLYMCKDYDYSKDMSNQPKHFCTIPEETDAFLINNCTQPHGVDVKEGVDDDRIVGFILGKVIKSAHQKLIERSANKYNTQVIKKNELRI
Ga0211580_1000006365	F078577	AGGA	MGENSIVSDVYYKVTVTRGELSSSVYWWEKTYASLMESVDFLYKYAKVDAVELEMITKKEYDNRTN