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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020420 Open in IMG/M |
| Scaffold ID | Ga0211580_10000003 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 337486 |
| Total Scaffold Genes | 443 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 367 (82.84%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_132 | |||||||
| Coordinates | Lat. (o) | 31.493 | Long. (o) | -159.0606 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003769 | Metagenome / Metatranscriptome | 469 | Y |
| F022760 | Metagenome / Metatranscriptome | 213 | Y |
| F026719 | Metagenome / Metatranscriptome | 197 | Y |
| F038656 | Metagenome | 165 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211580_1000000310 | F003769 | GGAGG | MQNFKTITKKTTTKVESVHVDVLYAVIENCYNSLQVVEADGTSASYFLNSANIFAQLQEVYAENCHNNYVSLASVMEVFANNITYYDEEYGLYESVVENTALAKVKLQDYACLSN |
| Ga0211580_10000003273 | F026719 | N/A | MLQSYDPYYRVVPNILGENTKKELLEIALKPNAFVDISYKISFFKLPSTIQKFNNTGLNCVCQLLRVNESGSKIHKDKNRYNEFEGTYIPRQTVVSFPLTENCGETWFYDESLNKVASINYEGYGAILNTGGHYHNVYFTENNDTRIVFQLCFEEAYEDVCQIFEDKLKGITL |
| Ga0211580_10000003276 | F022760 | N/A | MIEVKIITDDLIPKLENFCKKAKELGYVNNSSLREMRFEKTKEWGEYFCAVENGNIIAVAGCHPLPEVSKDAWRILFRGCELPHNNNFKGLGKGDWNSVTQREFIPRFIDYCPTDKLYITTNIYREHSNGKAARNHRLMGLLAKQGILEKHCDMELYNCEQTVWQLDIAEYNRRRSLLKGNYVVQS |
| Ga0211580_10000003432 | F038656 | GGAG | LPRTLWIYGDSFAVDWKVDWCWQRQLAGSLKIDRVVNQACAGSSNEWSAMQFRDDKQQPGDIVVFFTTEHSRQWFFKDRPHLSNLGSITDTHDAKALKNSEPEKYDAVMNYWLHLQRDDIDQLRMEHMIDSIRVKQIENELHLLLIPSFDSNMMWTDLIPVKGNMTFSVCDKEFVNEQEMLLWYNQSIDTRANHMTLANHSIFAEKVVQSLSDKKILDLETGFETGFLTHKQKLSHPGLLPELIEKAKGPGNSLPKECFTESA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |