Scaffold Ga0211512_10148238

Overview

Basic Information

• Taxon OID: 3300020419
• Scaffold ID: Ga0211512_10148238
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1087
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026437	Metagenome / Metatranscriptome	198	Y
F039870	Metagenome	163	Y
F086304	Metagenome / Metatranscriptome	111	Y
F099995	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_101482381	F026437	N/A	VEQSFLFATAGDDNQLMERLAKEWYGLDEHDSCGLREGMYWNDTMAYGAGSHYEVTKATYDELKDKRVFTEIYADEEVKYDRTPKTFEEVK
Ga0211512_101482382	F099995	AGGAGG	MAFLYKGTDDWSGVKWCVRTVYWHDSYGLNDMLVYGGDYNPYEKPENPLIEFYDMDSLVANTETGDEGHDARIKERGQFVSRYYLDTLNGTDRGTHASAPKFEDNWANGLNLHGGVERWSISGEFYTKAMQAVNADFKEWKENWMLEHEEVEDA
Ga0211512_101482383	F039870	AGGAGG	MPDFKVYVTVYHRIDVEANNAEDAKELAKEEIWDDHIKDVIFDVEEVDNDNA
Ga0211512_101482384	F086304	AGGAGG	MITLELSRICKNSGRDEGKIFLTGTTFAVTSEYHRWGKFERDICVVNNGTSNNGGYWVSDSYGNIVSMI