Scaffold Ga0211512_10092580

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211512_10092580

Scaffold Ga0211512_10092580

Overview

Basic Information
Taxon OID	3300020419 Open in IMG/M
Scaffold ID	Ga0211512_10092580 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1419
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_004
Coordinates	Lat. (^o)	35.5571	Long. (^o)	-6.5586	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060052	Metagenome	133	Y
F105365	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_100925803	F105365	AGGAG	MLNYNLQSPTPFIKKYIQKNNHIINKFADLLFSDPNTTSSSPYNSLPPLTQKLIFELSLYKLENGRDFYL
Ga0211512_100925804	F060052	AGGAG	MTKLQQHYINFQSQPTIPHKILYLQQNQNELSQFNINVPNLITAWTTNQWPWNQPKPDQN

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