Scaffold Ga0211512_10040914

Overview

Basic Information

• Taxon OID: 3300020419
• Scaffold ID: Ga0211512_10040914
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2261
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_100409142	F001611	AGGAGG	MPLVQKTITLAAGATSDNLLANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGAYVNNDLLTTGSQRNRVLVRFTNDTSGTRTIRAGVFIG
Ga0211512_100409143	F013311	AGGAGG	LAFLGDFGKFFGLGSSKEVLGDVGGTIGGIVGLEGAGRKAGEFIGTATSSIGGGSNVNISPLSTADQALEQSAVSVSQRGNVPQETSTMLGTTGMPVQTAGFGMIPGAIQGLRAVAPKIGQFFGGTGGAVATGFGTGVAINALSGQGMSKEKPVLTQSRRNKARVRQLVNFMGISGAAQFLSQASGVTVTENDVVMLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAVRRASSTTLIKN
Ga0211512_100409144	F002374	GAG	MDQVLLYVSVILASVSFFLCLYTCARVGKLLNSVKGLDWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQSNVADIRKNSIGG