Scaffold Ga0211512_10032986

Overview

Basic Information

• Taxon OID: 3300020419
• Scaffold ID: Ga0211512_10032986
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2560
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017285	Metagenome	241	Y
F037480	Metagenome	168	Y
F054844	Metagenome	139	Y
F105146	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_100329862	F037480	GGAGG	MKVGDLVRMPGAIEKITGIVLRTKPRGHLQADRVQVYWVEDAEASWEPIKWLAVINPS
Ga0211512_100329864	F105146	GGAGG	MIEVGNIVRSKYTVDRHRARIGIVMQLREGAYEDQPLVQVYWPHRRDTGWVEAKDMEVVS
Ga0211512_100329865	F054844	GGAGG	VIKTGTLVAFRGSVGLVMGPCKKRWAKDDDVYVKWTDESKLKIESSRFLEVLNESR
Ga0211512_100329867	F017285	AGGAG	MSYSGTVTCSHCYQRGHNKRKCPQLTEEIKGRYDGATSMAGKERAAGNENDARWYDERAERYREQYLKRTKIDLATGEKVTNKAAKAARMKKVTCGYCKERGHTRRVCEHAKRDKQVFIEETRRMRIAALETAREVGIGIGSMIPIRSSGYDAGGDWRSDLLTLRYVQSALWDDCHANRPTLMVKHVDARKLGAPNQSPYTSRDQITKLVQANDTALRYAAAEGQDLPQSSLVPTLDPPKGWLQPTEQSLKVAIKQAFPTTGNDYAKSRNYDFTYPSGITKEIIKDLGLEEHYNV