Scaffold Ga0211512_10021997

Overview

Basic Information

• Taxon OID: 3300020419
• Scaffold ID: Ga0211512_10021997
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3227
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F004376	Metagenome / Metatranscriptome	441	Y
F020461	Metagenome	224	Y
F050002	Metagenome	146	Y
F052639	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_1002199710	F020461	GGA	MYIDKYKVEIKGNKYHEKTDKKMTDQVLATYQSDDGMNIKKLMNVLEELMENHDAHHNITFNIVMKQYDHD
Ga0211512_100219973	F004376	GAGG	MKCLDCGCDEGTLFKEFQENPDQSYSWHDLAMMTEVCVSCGSENIKTESKE
Ga0211512_100219975	F052639	N/A	VKKTKQKPTPTIKDYKEAIQILMVDYADVWEKTKTFKEVNKKLRKLGI
Ga0211512_100219977	F002768	N/A	METKTSWWKLTIDDYPNYKPNDADLEHIAQLIKQGYDQGELIQEIEDDE
Ga0211512_100219978	F050002	GGA	MKQYNVNRIHSDLNNFDMYLQEHFGRVSYDDDADVNACIKDMKYVSKRLKKLDRIEKVLRINE