Scaffold Ga0211512_10016380

Overview

Basic Information

• Taxon OID: 3300020419
• Scaffold ID: Ga0211512_10016380
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3804
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006662	Metagenome / Metatranscriptome	367	Y
F036739	Metagenome	169	Y
F072437	Metagenome	121	N
F097516	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_1001638010	F006662	GAGG	VRTLTSKEYELMSKIYNSTDENEANLSFEFGLMNDTYYQLFHSYTETKKEVN
Ga0211512_100163805	F072437	N/A	MAIDTFTLQFNEYELETIAAALADYRDYADESTDPEDLIGRTPVLARCNAIEDKIDEAFANQ
Ga0211512_100163806	F097516	N/A	MVINSQLAPCQQSYRITLDLTVDDDFNPRQIDFRRVFDLSDYESINTHIEEL
Ga0211512_100163807	F036739	AGGAGG	MITPISPLVVNKYRKASFPQKVTQIGVNLWKKYIKRFINVILNILKRFISSVKSVINRMFWWF