Scaffold Ga0211512_10012237

Overview

Basic Information

• Taxon OID: 3300020419
• Scaffold ID: Ga0211512_10012237
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4521
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F052260	Metagenome / Metatranscriptome	143	N
F061779	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_100122376	F052260	AGGAG	MFVILATKPLNDRTKGFRFNFFGKKGIIRQRKFKSNGIKFIKGDCMNAYHFGKTTIYTEQAVNKTSTRKFHHVAG
Ga0211512_100122378	F004493	AGAAGG	MRNSVTKNNALDFTNDEWSQLIEGNGLLLMWFIEWNQFNDAVNKDREKPRQIQDFFAQKYNISAGCDPWHMKNSKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHIVRMD
Ga0211512_100122379	F061779	GAGG	MLPDEMEAEKNRKIILAQADEIDILKKNVRDLQGQYQSALIHNKRLIEQNAEAMVIIGHKQQEIDSMEEV