Scaffold Ga0211512_10007720

Overview

Basic Information

• Taxon OID: 3300020419
• Scaffold ID: Ga0211512_10007720
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5888
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_100077203	F004988	GAG	MVERVRAICPRCDGNGYIKVQKEELDCPQCEEKFMHMGGEVITHNGYVMLPKNQTRINIEGGREAIHKKAKKV
Ga0211512_100077206	F030928	AGGAG	MKKILTELKAYINFLLAGLTIFVCLIVIIVNSRYIVKLENTIDTMWREIEQVKETNIDLYQFIEEHKNDFE
Ga0211512_100077207	F000720	GAGG	MILNKENKVRKEIPNRMMSATFALPIDGRRVVGILDYTANETGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEEIIMGVQSDKKQRELSTDPYAMKE