NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211512_10000080

Scaffold Ga0211512_10000080


Overview

Basic Information
Taxon OID3300020419 Open in IMG/M
Scaffold IDGa0211512_10000080 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48619
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (80.28%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024920Metagenome204Y
F056082Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211512_1000008044F056082GGAGMGKVNEYSLDLLENYGEDVDCYYTQFLEVAFFLKVAASNEMAIAFIKRKLPVLAESEISFLISEIVGAYQDTL
Ga0211512_1000008062F024920GAGGMIEELLDKYHVDDFDDLLINIIKHMQDVKKDREVEDGE

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