Scaffold Ga0211512_10000080

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211512_10000080

Scaffold Ga0211512_10000080

Overview

Basic Information
Taxon OID	3300020419 Open in IMG/M
Scaffold ID	Ga0211512_10000080 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	48619
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (80.28%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_004
Coordinates	Lat. (^o)	35.5571	Long. (^o)	-6.5586	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024920	Metagenome	204	Y
F056082	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_1000008044	F056082	GGAG	MGKVNEYSLDLLENYGEDVDCYYTQFLEVAFFLKVAASNEMAIAFIKRKLPVLAESEISFLISEIVGAYQDTL
Ga0211512_1000008062	F024920	GAGG	MIEELLDKYHVDDFDDLLINIIKHMQDVKKDREVEDGE

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