Scaffold Ga0211557_10152361

Overview

Basic Information

• Taxon OID: 3300020418
• Scaffold ID: Ga0211557_10152361
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1105
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_142
• Coordinates
  • Lat. (^o): 25.5416
  • Long. (^o): -88.4044
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F037237	Metagenome / Metatranscriptome	168	Y
F062791	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211557_101523611	F062791	N/A	GYGTVFVRDLDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVS
Ga0211557_101523612	F003693	AGG	MIKSKQALIDISADNNNSLGVQAEGMLLCGIQFPAAMTGSNISFDFALDNSTWVDVKETDGTDVTYTVSAGDIVRVDPSGWAFASNGYIRITSDGNEAADRKIILHFRHS
Ga0211557_101523613	F037237	AGGAG	MSNIGNLVDRTFREYLEPMDDLVSYTTLSTGVNDSVTDIVFDGDMLSIEEEDALDKGTIIEINQELMICTDLNAVTNTITVKRGMKGTSAAAHTAGDLIKLSPPFPRKNVFDAVCDQIKNLFPTLFAVETQSITTGTGYTLLGSYNAPGTHNYIMSILGAISQYTDFSAGSDTTGVNFSPVTSSLIELP