NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211557_10040555

Scaffold Ga0211557_10040555


Overview

Basic Information
Taxon OID3300020418 Open in IMG/M
Scaffold IDGa0211557_10040555 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2481
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_142
CoordinatesLat. (o)25.5416Long. (o)-88.4044Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006792Metagenome364Y
F082806Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211557_100405551F082806AGGMAYNIKDVFYLSTEATIAASTSNGGSAQLDLSAYIDPIARGRQKGTGLAIYKAHFAVTQANSDPIDD
Ga0211557_100405552F006792N/AMSGKDKFSFGSDPKMREVPPGTEAKFQFGGAPSIVETEWGEKYSFPIVLFSHDSYESFPINLVWESKSMVAKEVYDAYNNKLSTREPFRNAYKSSKWQLTRFDNGAYFLDQL

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