Scaffold Ga0211557_10029304

Overview

Basic Information

• Taxon OID: 3300020418
• Scaffold ID: Ga0211557_10029304
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3009
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C620 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_142
• Coordinates
  • Lat. (^o): 25.5416
  • Long. (^o): -88.4044
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073646	Metagenome	120	Y
F092069	Metagenome	107	Y
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211557_100293041	F092069	N/A	YNGKSKEIPINEIKSVNDVADAYAELGLKTKQPRKRRLYYTLPNGKHHSFLSNKNHKYAVCCTDEDTQLGFGYTDDYESAKDMAWTWSNKWYLTDKEFVVVDVQEVE
Ga0211557_1002930410	F099447	GGAGG	MPKKDADKIINHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLEEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKYISTAKKLISATTLTPDDYDNQESFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLKR
Ga0211557_100293049	F073646	GGAGG	MLQSEYLELAIELYDIYSAHNIHHRRWLTARELQRLKGGPGLIAKVKSKKGKMSGLKPIFVDYVNTQRQYRSCNTPQQWSCKFDYWLQDEYEFTTEELDELRSDRGRQSRRETSKEVTI