Basic Information | |
---|---|
Taxon OID | 3300020418 Open in IMG/M |
Scaffold ID | Ga0211557_10029304 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3009 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C620 | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | TARA_142 | |||||||
Coordinates | Lat. (o) | 25.5416 | Long. (o) | -88.4044 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F073646 | Metagenome | 120 | Y |
F092069 | Metagenome | 107 | Y |
F099447 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211557_100293041 | F092069 | N/A | YNGKSKEIPINEIKSVNDVADAYAELGLKTKQPRKRRLYYTLPNGKHHSFLSNKNHKYAVCCTDEDTQLGFGYTDDYESAKDMAWTWSNKWYLTDKEFVVVDVQEVE |
Ga0211557_1002930410 | F099447 | GGAGG | MPKKDADKIINHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLEEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKYISTAKKLISATTLTPDDYDNQESFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLKR |
Ga0211557_100293049 | F073646 | GGAGG | MLQSEYLELAIELYDIYSAHNIHHRRWLTARELQRLKGGPGLIAKVKSKKGKMSGLKPIFVDYVNTQRQYRSCNTPQQWSCKFDYWLQDEYEFTTEELDELRSDRGRQSRRETSKEVTI |
⦗Top⦘ |