NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211557_10024487

Scaffold Ga0211557_10024487


Overview

Basic Information
Taxon OID3300020418 Open in IMG/M
Scaffold IDGa0211557_10024487 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3352
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_142
CoordinatesLat. (o)25.5416Long. (o)-88.4044Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018737Metagenome233Y
F025007Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0211557_100244871F025007N/AMTENDLLLKIEGLEKIIKEKNEAAIYHTAELKQTKQELVDLHKPELTTSQMQAIEGAVEQAVSEFDFTDTENFEIDYSLDYDGRVQCESHEFINDCDLVEMIVNRVCKLFKEIKDESTDTKQ
Ga0211557_100244876F018737N/AMNKIKFLKKDMTTGLQKIQLNGLTYKPYYICDLPDKFGTDEITTWFNYKGLTYISE

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