Scaffold Ga0211557_10001557

Overview

Basic Information

• Taxon OID: 3300020418
• Scaffold ID: Ga0211557_10001557
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16278
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_142
• Coordinates
  • Lat. (^o): 25.5416
  • Long. (^o): -88.4044
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F006348	Metagenome / Metatranscriptome	375	Y
F010476	Metagenome / Metatranscriptome	303	Y
F053343	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211557_100015571	F053343	N/A	HTSCCLRIRGGIRKNXEVVECDHITTHQQMDXWCASKRSVTNLPRQFGLGGYNEYINRSFPLHHHSNLFPMNPQAHRSTEELKTIVKALSKLRLLNTPEEDQRLFECEQELRKRKREQDFIDAHFQVITY
Ga0211557_100015573	F001419	GGAGG	MYEFDGYDEILKCYEGVTDIHASTSFEVGLMNDLYYQLFYNYDSX
Ga0211557_100015576	F006348	GGAGG	MNKKYIVEDIRFDTKFKTDAEIKDLEWKSINGLGIWDAEGRTEDERINNLWEKVQDYMGVYLQSLEYCNNRPHPLTAFK
Ga0211557_100015578	F010476	GGA	VAQGDLQKSPSPFIIRVYKTNLKIMFDYKIIAYNKLGKVQETENLFCSPDEINDVMYTMSEQFGYAEALDTMDTHCGEYGERPLSLGERRYF