Scaffold Ga0211557_10000117

Overview

Basic Information

• Taxon OID: 3300020418
• Scaffold ID: Ga0211557_10000117
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63146
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_142
• Coordinates
  • Lat. (^o): 25.5416
  • Long. (^o): -88.4044
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017658	Metagenome	239	Y
F025054	Metagenome	203	Y
F033841	Metagenome / Metatranscriptome	176	N
F036741	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211557_1000011737	F033841	AGG	MEDLKPETIKIVTPNPTNFRYSYLVTPDEYKGIKKYKAECLIKKGIMMKDEMGREVDAVEHIYSQLEELLERWKVSLKEYYPDRKFTLTKNKFGEPALPYYLEDDYLVIKTSKKAGGVKQNGDVWTNPPVTFWANEDPLRLMTDEEKEQYEKISPMTEGQMSMKCSGYDAGANGVGIRCQPLQVIVRKHVEWTGSPDFQAEAPNSYEEKSTASTAADF
Ga0211557_1000011742	F017658	N/A	MNFMEEINEETQAMLKQISIRKAEKTAVAKKRIAELKQLIKFWEEDL
Ga0211557_1000011743	F025054	N/A	MSRSKTATLWELDCILHRAAKLTDRDFTIYPPSDEEGNLSVDETIEYYKKEIIKTINQI
Ga0211557_1000011748	F036741	N/A	MNHKEFFKILVGNPPPEVEFEILVKQRETEQMPDEAVKAYCLDLIKYTKLQDLLLTSAIMRISEIETKLYKYEKGMKLYKKVRKLGFIGKIRYLLFGKTDKR