NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211528_10031164

Scaffold Ga0211528_10031164


Overview

Basic Information
Taxon OID3300020417 Open in IMG/M
Scaffold IDGa0211528_10031164 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2502
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0108Long. (o)64.532Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013943Metagenome267Y
F030240Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0211528_100311641F030240AGGAGMATPTYPSTHRSQPAYKGTGDYNKITKVASSTTFHATGSNAGAAFICEATNNVVIHAANGGVIPGTALTADTLYPIGTKKVVIGSTG
Ga0211528_100311644F013943GGAGMNIFEQKLWKLINEASPTGTSGYGAGITTGDAWPDGLFTKRGERRYIGPASLTRGMQQVDFPASDNIYGGPDSQNNERRAKRDAGKLYKYLSDPDGNSEIKADELRDDTPPLSPKQRVYGIHGFHRKQEYTIPPETANFITTSDTLIKPTTPPEGTVSGGVPATPEPGSKEMGSASGYRQVNPSGEKVFASNKKLWNKWKDHRLMGAVKGREWKGGKLVDLLPKGAK
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