Scaffold Ga0211528_10025297

Overview

Basic Information

• Taxon OID: 3300020417
• Scaffold ID: Ga0211528_10025297
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2878
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0108
  • Long. (^o): 64.532
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016292	Metagenome	248	Y
F066702	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211528_100252974	F066702	N/A	MSLKEIKYRNFKAKIIKLSNKQAKKEMIYGYYNPNESTIAIQENLGKISYIDTLLHEIAHFIADKSAIRLKNLGEEGVATFIGSEFCKVFLQNPKLLTFIKRNLSK
Ga0211528_100252976	F016292	N/A	MTNRPRQIGECYTNFGLKHTSKSQNTIPDDVRFFRYVCLTPKEKSNLPTNCSFIGGTLSHEVLQESLCENKKVGDVIASEKFKEKVEKYEPINEKDKIKFEHIIKNMSALSINHLTNIASLPSQKWENEKEYTHWDQRIKTYFLAYVDLIGETHFGDIKNVFGTLVKTKSGYSYTKKKCPKVPFHSDCLQIALYSKLLPKHIPFLTYASDSDHVIFTPDNCIELRKENLEKYYDELVLYQMCWEKKLE