Scaffold Ga0211528_10006221

Overview

Basic Information

• Taxon OID: 3300020417
• Scaffold ID: Ga0211528_10006221
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7406
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0108
  • Long. (^o): 64.532
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048576	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211528_100062215	F048576	AGGA	MTIEAYIPKHAYFSTSLTPTNFDIEKYENAKVLELYGNAGTLLNDPDNRVKEENYTVFDSDQEAIDQGKEDFPNADFRMWNRHNQMNNPSGNVDEPMPFKEGEMFDCIFSYMKTANVDPEILMADLQTCYDHLNPGGAICIGVFIREVALNYFVVRRTHEYGMLEPTLVESTENSDVFCLINNDDIRVDVDRVPTEGDDAVVEATHFTWFWNNEALTNKLKTAFPDATVHTRRLPPMWTLQNPLVIEKPE