Scaffold Ga0211528_10006050

Overview

Basic Information

• Taxon OID: 3300020417
• Scaffold ID: Ga0211528_10006050
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7549
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0108
  • Long. (^o): 64.532
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039872	Metagenome	163	Y
F102838	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211528_1000605011	F039872	AGG	MSTNISGLIDRVYREYLEPMDDVNSYTTLAAGVNNSITTITFAGELLTQEEKDAMDAGTIIECDKELMRCVSLDTVNNSVVVVRGVRGTDAAEHLEGAVIKIAPPFPRQVVFDAVKDQINNLFPTLFAVETQSLTTGTGYTLIGSYDSPGTHNYIVSILSAISQYTDFSVGADTTGVNFAPVTSSLVELPNPFTYTDADGTSRTITYSSGPSVVHAIQFAGISSGHTAHVTFKKKFIEPTAETDTLATIGLETEYEPIIMAGVAAQLMAGRDVPAATADYITDQLSVSSFPVNSATSIRNSLLQYQQLLINQARKYLRAKYPEAVSVDGMVYGIQA
Ga0211528_1000605013	F102838	N/A	FSLDNSTWVDVKETDGTEVQYTVSAGDVVRVDPSGWAFASNGYLRVSSNGTEAADRKIILHFRHS