NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211644_10132173

Scaffold Ga0211644_10132173


Overview

Basic Information
Taxon OID3300020416 Open in IMG/M
Scaffold IDGa0211644_10132173 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1018
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.972Long. (o)-84.601Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005707Metagenome / Metatranscriptome392Y
F029767Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0211644_101321733F005707AGGAGMAQTFIVKGDVVTNASTNDFGKAHFVRVTATGDTTGTVFESDGTTELGKFYLEDGDTVIIEKGTTDKITCPTSKASAVGSPRG
Ga0211644_101321734F029767GAGGMTISTTKLVDDNFKIIVNSNGVGGEFQQKLVDVVGSDNASSEPKVSIANMQYEILGEGK

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