NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211553_10312345

Scaffold Ga0211553_10312345


Overview

Basic Information
Taxon OID3300020415 Open in IMG/M
Scaffold IDGa0211553_10312345 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)636
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_145
CoordinatesLat. (o)39.0869Long. (o)-70.0111Alt. (m)Depth (m)590
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002874Metagenome / Metatranscriptome524Y
F025857Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0211553_103123451F002874GAGMKEKIDLSLNRSLEELESSYWEFLEATEGEDSSEWSKSVQEDLSALEGYLMKMEVL
Ga0211553_103123452F025857N/AMTLHRIAPGCTFESEDDVVMNPVIGRKKSVAVKSPKLYYRTSELDDIPDNFVERMKKFKRVEVRKEEREVITPDGFAVSIAYNKSGYQLIPKE

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