Scaffold Ga0211553

Basic Information
Taxon OID	3300020415 Open in IMG/M
Scaffold ID	Ga0211553_10022124 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020415 Open in IMG/M

Scaffold ID

Ga0211553_10022124 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2881
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2881

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_145
Coordinates	Lat. (^o)	39.0869	Long. (^o)	-70.0111	Alt. (m)	Depth (m)	590
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_145

Coordinates

Lat. (^o)

39.0869

Long. (^o)

-70.0111

Alt. (m)

Depth (m)

590

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F001606	Metagenome	664	N
F001922	Metagenome	617	Y
F014859	Metagenome	259	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0211553_100221242	F001922	GGA	MVLQKLLIEEGIKRGLKESQKYSVSVLGYDFVGLVSRLAVFFVMAFLINSYFVATISGGIWLNSLGGFFNMKFPTTLPEWLTQLFTTGYKGFTFWNLVTTIAVLIVVVEAMQYDKMLKEKGQKPNVTSLAVFGVIALGLSLITFPTIIQKLKERRILNA
Ga0211553_100221243	F014859	GAG	LVNELIPPEIIPIIWFAGISVTVYFFFRKFSDVIKEKIKHTTRKNKTVDTEETGNQIDNLINNAPRILDEVNKEIAAQREQGVTDQQMKGLLQKKQLLELGTSIPPEVYNIVAKPLVKKLIGFVGKI
Ga0211553_100221244	F000704	AGGTGG	MPHETRDIQPSQVKSLAVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDSGLLLNEGNDTAFSQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSLGGLHIKITERSTNDRLLYENTFQSGAATLGATGTQMHWFTQDIVETIKINKGNPVDILIELETVVTGSNTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYKKDRVSTLGQ
Ga0211553_100221245	F001606	AGGTGG	LTYGYDDVTFTSIGTGVAETQLNSGTSLSAPDPAHGFLACIPYQMELGAFTTNQSLLTSLRIQSDDVSVEPKKLVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQALVANAVAPGVGCTVIYDTDGTNGAEQYYTRPTNETASSATINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFNTSMPYRVAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211553_10022124

Overview

Ecosystem & Geography

Associated Families

Sequences