Scaffold Ga0211523_10123089

Overview

Basic Information

• Taxon OID: 3300020414
• Scaffold ID: Ga0211523_10123089
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1091
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_036
• Coordinates
  • Lat. (^o): 20.8199
  • Long. (^o): 63.5138
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009104	Metagenome	323	Y
F065110	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211523_101230893	F065110	N/A	MKISNNAVVELKKLRAALDDMYNKLNEPLYKKNLGAKVSYLEVKPFDSVSENFQYISKIVRDLQDSERVGD
Ga0211523_101230894	F009104	AGGAG	MANDHAQDRYDPPKVGSDFDKEYFGDVNIGEVFRLRPDSQAKTFRKVKDGVALDVKELKEVQLGDRDEIYVKS